Associated Phd student
defended: Nov 30 2007
"Visual Data Mining and Visualization Design for Climate Research"
Reviewers: Heidrun Schumann (Universität Rostock, Germany)
Helwig Hauser (University of Bergen, Norway)
Holger Theisel (Otto-von-Guericke-Universität Magdeburg, Germany)
Associated Phd student
defended: May 20 2008
"Definition und Realisierung einer Plattform zur modellbasierten Komposition von Simulationsmodellen"
Reviewers: Adelinde Uhrmacher (Universität Rostock, Germany)
Axel Lehmann (Universität der Bundeswehr München, Germany)
Andreas Tolk (Old Dominion University, Norfolk, Virginia, USA)
Phd student
defended: May 14 2010
"Visual Support for the Modeling and Simulation of Cell Biological Processes"
Reviewers: Heidrun Schumann (Universität Rostock, Germany)
Bernhard Preim (Otto-von-Guericke-Universität Magdeburg, Germany)
James J. Thomas (Pacific Northwest National Laboratory, Richland, Washington, USA)
Project S1: Visual Support for the Development of Methods and Models for Regenerative Systems
Phd student
defended: May 31 2010
Reviewers: Dieter G. Weiss (Universität Rostock, Germany)
Arndt Rolfs (Albrecht-Kossel-Institut für Neuroregeneration, Universität Rostock, Germany)
Jochen Prehn (Physiology & Medical Physics, Royal College of Surgeons in Ireland, Dublin, Irland)
Project W2: Interference of the canonical Wnt pathway and apoptosis signaling pathways during proliferation and differentiation of neuronal progenitor cells
Phd student
defended: May 31 2010
"Rolle of Wnt Signaling in Proliferation and Differentiation of ReNcell VM cells"
Reviewers: Arndt Rolfs (Albrecht-Kossel-Institut für Neuroregeneration, Universität Rostock, Germany)
Dieter G. Weiss (Universität Rostock, Germany)
Conny Noguchi (National Institute of Helth (NIH), Bethesda, USA)
Project R2: The Wnt dependent calcium signal path in the differentiation of human neural progenitor cells
Phd student
defended: Jun 07 2010
"Spatio-temporal control of Wnt/beta-catenin signaling during fate commitment of human neural progenitor cells"
Reviewers: Dieter G. Weiss (Universität Rostock, Germany)
Ernest Arenas (Karolinska Institute, Stockholm, Schweden)
Project W1: Wnt Signaling mediated changes in the cytoskeleton motor enzyme system: Active and passive role in the differentiation of neural progenitor cells
Phd student
defended: Jun 09 2010
"Explorative Graph Visualization"
Reviewers: Heidrun Schumann (Universität Rostock, Germany)
Keith Andrews (Technical University Graz, Austria)
James Abello (DIMACS Institute, Rutgers University, USA)
Project S2: Visual Data Mining of Complex Structures
Phd student
defended: Aug 26 2010
Reviewers: Adelinde M. Uhrmacher (Universität Rostock, Germany)
Joachim Niehren (INRIA Lille Nord Europe, France)
Corrado Priami (Microsoft Research, University of Trento, Italy)
Project U1: Structure and space in modeling regenerative systems
Associated Phd student
defended: Oct 15 2010
"Automatic Algorithm Selection for Complex Simulation Problems"
Reviewers: Adelinde M. Uhrmacher (Universität Rostock, Germany)
David M. Nicol (University of Illinois at Urbana-Champaign, USA)
Georgios K. Theodoropoulos (University of Birmingham, UK)
Phd student
defended: Oct 19 2010
"Efficient non-spatial and spatial simulation of biochemical reaction networks"
Reviewers: Adelinde M. Uhrmacher (Universität Rostock, Germany)
Kevin Burrage (Oxford University, UK)
Koichi Takahashi (RIKIN Institute Yokohama, Japan)
Project U2: Efficient and flexible simulators for cell biological systems
Associated Phd student
defended: Mar 21 2011
"Novel small molecules as GSK-3β inhibitors in human neural progenitor cells"
Reviewers: Arndt Rolfs (Albrecht-Kossel-Institut für Neuroregeneration, Universität Rostock, Germany)
Matthias Beller (Leibniz-Institut für Katalyse, Universität Rostock, Germany)
Sergei Kuznetsov (Institut für Biowissenschaften, Universität Rostock, Germany)
Johannes Schwarz (Klinik für Neurologie, Universität Leipzig, Germany)
Associated Phd student
defended: Apr 13 2011
"Guided Visual Analysis of Heterogeneous Data"
Reviewers: Dieter Schmalstieg (Graz University of Technology, Austria)
Heidrun Schumann (Universität Rostock, Germany)
Phd student
defended: Jul 01 2011
Reviewers: Adelinde M. Uhrmacher(Universität Rostock, Germany)
Arndt Rolfs (Universität Rostock, Germany)
James R. Faeder (University of Pittsburg, USA)
Project R1: Analysis of the functional impact of the canonical WNT/Fz/Dsh/GSK-3β/β-Catenin-signaling pathways for the differentiation of human neural progenitor cells.
Project Rolf_K1: in vitro and in silico exploration of the Wnt/β-catenin signaling pathway during differentiation oh human neural progenitor cells
Phd student
defended: Jul 12 2011
"A systems biology approach to dynamic modelling of the AMP-activated kinase pathway"
Reviewers: Olaf Wolkenhauer(Universität Rostock, Germany)
Ursula Kummer (Universität Heidelberg, Germany)
Mattias Goksör (University of Gothenburg, Sweden)
Project Wolk_A1: A systems biology approach to dynamic modeling of signaling pathways and their characterization through quantitative measures.
Phd student
defended: Jul 27 2011
"<link annotation-based storage and retrieval of models simulation descriptions in computational external-link internen>Annotation-based storage and retrieval of models and simulation descriptions in computational biology"
Reviewers: Andreas Heuer(Universität Rostock, Germany)
Nicolas Le Novère (European Bioinformatics Institute, Cambridge, UK)
Ulf Leser (Humboldt-Universität zu Berlin, Germany)
Project H1: Defining and storing model components.
Phd student
defended: Mar 25 2013
"Toward Accessible Multilevel Modeling in Systems Biology. A Rule-based Language Concept"
Reviewers: Adelinde M. Uhrmacher(Universität Rostock, Germany)
James R. Faeder (University of Pittsburgh, USA)
Ursula Kummer (Universität Heidelberg, Germany)
Project Uhrm_A1: Multi-level modeling of cell-biological systems.
Phd student
defended: Oct 28 2013
Reviewers: Sergei Kuznetsov(Institut für Biowissenschaften, Universität Rostock, Germany)
Arndt Rolfs (Albrecht Kossel Institut für Neuroregeneration, Universität Rostock, Germany)
Project Weis_A1: The reorganization of the cytoskeleton during Wnt-mediated neuronal differentiation
Phd student
defended: Dec 19 2013
Reviewers: Olaf Wolkenhauer (Universität Rostock, Germany)
Adelinde M. Uhrmacher (Universität Rostock, Germany)
Helen M. Byrne (University of Oxford, UK)
Project Wo1: The influence of spatial aspects and feedbacks on the dynamics of intercellular signal transmission.
Project Wolk_K1: Mathematical modelling of cellular signal transduction: kinetic properties of the Wnt-signalling pathway.
Associated Phd student
defended: Jan 07 2014
"Toward Guiding Simulation Experiments"
Reviewers: Adelinde M. Uhrmacher (Universität Rostock, Germany)
Luiz Felipe Perrone (Bucknell University, USA)
Corrado Priami (Centre for Computational and Systems Biology, University of Trento, Italy)
Phd student
defended: Nov 27 2014
"Graph visualization in space and time"
Reviewers: Heidrun Schumann (Universität Rostock, Germany)
Bodo Urban (Fraunhofer-IGD, Universität Rostock, Germany)
Andreas Kerren (Linnaeus University, Sweden)
Project Schu_A2: Multi-Level Visualization of Dynamic Complex Graphs.
Phd student
defended: Dec 05 2014
"The network of signaling pathways: Analys is of the Notch and Wnt signaling pathway in the differentiation of human neural progenitor cells "
Reviewers: Reinhard Schröder(Universität Rostock, Germany)
Arndt Rolfs (Albrecht Kossel Institut für Neuroregeneration, Universität Rostock, Germany)
Project Rolf_A2: Effects of Wnt5a and Wnt7a on the differentiation of human neural progenitor cells
Phd student
defended: Nov 13 2015
"Contributions to Models of Single Neuron Computation in Striatum and Cortex "
Reviewers: Adelinde Uhrmacher(Universität Rostock, Germany)
Lars Schwabe (Xplosion Interactive GmbH)
D. James Surmeier (Northwestern University, USA)
Project Schw_A1: Multi-scale modeling and simulation of neural systems.
Associated Phd student
defended: Apr 29 2016
Reviewers: Adelinde M. Uhrmacher (Universität Rostock, Germany)
Kevin Burrage (University of Oxford, UK)
Edda Klipp (Humboldt-Universität zu Berlin, Germany)
Associated Phd student
defended: Jul 21 2016
"Towards reproducible simulation studies with JAMES II"
Reviewers: Adelinde M. Uhrmacher (Universität Rostock, Germany)
Oliver Rose (University of the Federal Armed Forces Munich, Germany)
uiz Felipe Perrone (Bucknell University, USA)
Phd student
defended: Jan 18 2017
Reviewers: Arndt Rolfs (Universitätsmedizin Rostock, Germany)
Hugo Murua Escobar (Universitätsmedizin Rostock, Germany)
Gabriele M. Rune (Universitätsklinikum Hamburg-Eppendorft, Germany)
Project Rolf_A1 - Effects of Wnt/calcium-pathway on the differentiation of ReNcell VM cells.
Phd student
defended: Jan 31 2017
Reviewers: Adelinde M. Uhrmacher(Universität Rostock, Germany)
James R. Faeder (University of Pittsburgh, USA)
Heinz Koeppl (Technische Univerität Darmstadt, Germany)
Project Uhrm_A2: Stochastic, Discrete Modelling of Cell Biological Processes in Continuous Space.
Phd student
defended: Jun 14 2023
"Contributions to the reuse and reproducibility of computational biology models"
Reviewers: Dagmar Walthemath (Universität Greifswald, Germany)
Jacky Snoep (Stellenbosch University, South Africa)
Kurt Sandkuhl (Univerität Rostock, Germany)
Project H3_1 - Distributed information retrieval using web based nets